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TCGADataTool

Guides

  • TCGA Data Tool

Tech Notes

  • Custom Entities
  • Data Exploration
  • Data Modeling
  • Data Visualization
  • Genomic Data
  • Images Download
  • Property Standard Name
  • User Interface

Symbols

  • buildDesignMatrix
  • buildModel
  • cleanRawData
  • columnHeaderRiskClassSummary
  • downloadGenomicData
  • dynamicallyExploreThreshold
  • exampleDataTCGA
  • getHistologicalImages
  • getPotentialPredictors
  • importGenomicDataFile
  • inspectPotentialPredictors
  • modelMeasurementsAtThreshold
  • overallSurvivalPlot
  • progressionFreeSurvivalPlot
  • pullDataSlice
  • radiologicalImagesBatchProcessing
  • swimmerPlot
  • TCGADataToolUserInterface
JaneShenGunther`TCGADataTool`
pullDataSlice
​
pullDataSlice
[dataStructure,properties]
takes a list of property standard names and extracts the values for those
properties
from the
dataStructure
.
​
Details and Options

Examples  
(4)
Basic Examples  
(1)
Given the example data structure for project TCGA-CESC:
In[1]:=
dataStructure=
exampleDataTCGA
[{"TCGAProjectData","TCGACESCExceptGenomicDataAllPatients"}];
In[2]:=
dataStructure//Length
Out[2]=
307
Pull data for properties "Clinical::Patient::vital_status" and "Biospecimen::Sample::sample_type":
In[3]:=
properties={"Clinical::Patient::vital_status","Biospecimen::Sample::sample_type"};
In[4]:=
dataSlice=
pullDataSlice
[dataStructure,properties];
In[5]:=
dataSlice〚;;1〛
Out[5]=
{Clinical::Patient::vital_status{Alive},Biospecimen::Sample::sample_type{Primary Tumor,Blood Derived Normal}}
In[6]:=
dataSlice〚;;10〛//Dataset
Out[6]=
Options  
(3)

SeeAlso
swimmerPlot
 
▪
Query
TechNotes
▪
Property Standard Name
RelatedGuides
▪
TCGA Data Tool
""

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