Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
TCGA Data Tool
TCGADataTool provides a user-friendly interface to retrieve TCGA project data from the GDC and TCIA portals and a suite of tools that can be used to analyse and visualize the data retrieved.
User interface
— main user interface
— examples of different outputs from the user interface
Data retrieval
— download histological images
— download genomic data from GDC portal
— import genomic data from the raw files
Data processing
— cleans data in a data structure
— retrieve property data from a data structure
Data modeling
— find potentially useful predictors
— visualization of potentially useful predictors
— creates a design matrix
— creates and trains a model
Visualizations
— swimmer plot
— overall survival (OS) plot
— progression free survival (PFS) plot
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