Wolfram Language Paclet Repository

Community-contributed installable additions to the Wolfram Language

Primary Navigation

    • Cloud & Deployment
    • Core Language & Structure
    • Data Manipulation & Analysis
    • Engineering Data & Computation
    • External Interfaces & Connections
    • Financial Data & Computation
    • Geographic Data & Computation
    • Geometry
    • Graphs & Networks
    • Higher Mathematical Computation
    • Images
    • Knowledge Representation & Natural Language
    • Machine Learning
    • Notebook Documents & Presentation
    • Scientific and Medical Data & Computation
    • Social, Cultural & Linguistic Data
    • Strings & Text
    • Symbolic & Numeric Computation
    • System Operation & Setup
    • Time-Related Computation
    • User Interface Construction
    • Visualization & Graphics
    • Random Paclet
    • Alphabetical List
  • Using Paclets
    • Get Started
    • Download Definition Notebook
  • Learn More about Wolfram Language

TCGADataTool

Guides

  • TCGA Data Tool

Tech Notes

  • Custom Entities
  • Data Exploration
  • Data Modeling
  • Data Visualization
  • Genomic Data
  • Images Download
  • Property Standard Name
  • User Interface

Symbols

  • buildDesignMatrix
  • buildModel
  • cleanRawData
  • columnHeaderRiskClassSummary
  • downloadGenomicData
  • dynamicallyExploreThreshold
  • exampleDataTCGA
  • getHistologicalImages
  • getPotentialPredictors
  • importGenomicDataFile
  • inspectPotentialPredictors
  • modelMeasurementsAtThreshold
  • overallSurvivalPlot
  • progressionFreeSurvivalPlot
  • pullDataSlice
  • radiologicalImagesBatchProcessing
  • swimmerPlot
  • TCGADataToolUserInterface
JaneShenGunther`TCGADataTool`
cleanRawData
​
cleanRawData
[dataStructure]
performs various cleaning operations on
dataStructure
and returns the cleaned data structure.
​
Details and Options

Examples  
(7)
Basic Examples  
(1)
Given an example data structure:
In[1]:=
dataStructure={​​"bcr_patient_uuid""uuid1",​​"bcr_patient_barcode""barcode1","Clinical""Patient"{"bcr_patient_uuid""uuid1","bcr_patient_barcode""barcode1",​​"property1""2014-2-10","property2""N/A","property3""123"}​​,​​"bcr_patient_uuid""uuid2",​​"bcr_patient_barcode""barcode2","Clinical""Patient"{"bcr_patient_uuid""uuid2","bcr_patient_barcode""barcode2",​​"property1""2014-2-10","property2""YES","property3""123"}​​,​​"bcr_patient_uuid""uuid3",​​"bcr_patient_barcode""barcode3","Clinical""Patient"{"bcr_patient_uuid""uuid3","bcr_patient_barcode""barcode3",​​"property1""[Not Available]","property2""YES","property3""123"}​​};
Clean its values with default options:
In[2]:=
cleanRawData
[dataStructure]
Out[2]=
{bcr_patient_uuiduuid1,bcr_patient_barcodebarcode1,ClinicalPatient{bcr_patient_uuiduuid1,bcr_patient_barcodebarcode1,property12014-2-10,property2Missing[NotAvailable],property3123},bcr_patient_uuiduuid2,bcr_patient_barcodebarcode2,ClinicalPatient{bcr_patient_uuiduuid2,bcr_patient_barcodebarcode2,property12014-2-10,property2YES,property3123},bcr_patient_uuiduuid3,bcr_patient_barcodebarcode3,ClinicalPatient{bcr_patient_uuiduuid3,bcr_patient_barcodebarcode3,property1Missing[NotAvailable],property2YES,property3123}}
Scope  
(4)

Options  
(2)

TechNotes
▪
Property Standard Name
RelatedGuides
▪
TCGA Data Tool
""

© 2025 Wolfram. All rights reserved.

  • Legal & Privacy Policy
  • Contact Us
  • WolframAlpha.com
  • WolframCloud.com