Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
JaneShenGunther`TCGADataTool`
getHistologicalImages  |
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Details and Options
Examples
(3)
Basic Examples
(1)
Get the example data structure for project TCGA-CESC and select a valid patient UUID from that data structure:
In[1]:=
dataStructure=
[{"TCGAProjectData","TCGACESCExceptGenomicDataAllPatients"}];examplePatientUUID="03804F9B-DF7C-462C-8984-8EB3A5ED4999";
 | exampleDataTCGA |
Download all histological images for the selected patient UUID:
In[2]:=
 | getHistologicalImages |
Tue 14 Feb 2023 18:26:19 Getting histological images for patient UUID 03804F9B-DF7C-462C-8984-8EB3A5ED4999...
Tue 14 Feb 2023 18:26:19 Identified 2 histological images for patient UUID 03804F9B-DF7C-462C-8984-8EB3A5ED4999
Tue 14 Feb 2023 18:26:19 Total histological images file size for patient UUID 03804F9B-DF7C-462C-8984-8EB3A5ED4999:
400.982
MB
Tue 14 Feb 2023 18:26:19 Starting download...
Tue 14 Feb 2023 18:26:19 Downloading file ID 821e284e-0846-466e-862a-3d8e80cc4b3a: file size: , file name: TCGA-VS-A9V2-01Z-00-DX1.61AD73DF-4A1D-4398-9558-00ADAF82952A.svs, file experimental strategy: Diagnostic Slide
171.884
MB
Tue 14 Feb 2023 18:27:10 Download completed successfully.
Tue 14 Feb 2023 18:27:10 Downloading file ID 89fb2c28-2eba-406c-a687-385e8ccfc468: file size: , file name: TCGA-VS-A9V2-01A-01-TS1.84BB47F0-6ECC-4C57-BBFF-7A833624E45E.svs, file experimental strategy: Tissue Slide
229.098
MB
Tue 14 Feb 2023 18:28:15 Download completed successfully.
Tue 14 Feb 2023 18:28:15 Download completed.
Out[2]=
{/private/var/folders/9s/ssw_w4pj5tsfxv3r6yrjj1mw0000gn/T/TCGADataTool/03804F9B-DF7C-462C-8984-8EB3A5ED4999/821e284e-0846-466e-862a-3d8e80cc4b3a/TCGA-VS-A9V2-01Z-00-DX1.61AD73DF-4A1D-4398-9558-00ADAF82952A.svs,/private/var/folders/9s/ssw_w4pj5tsfxv3r6yrjj1mw0000gn/T/TCGADataTool/03804F9B-DF7C-462C-8984-8EB3A5ED4999/89fb2c28-2eba-406c-a687-385e8ccfc468/TCGA-VS-A9V2-01A-01-TS1.84BB47F0-6ECC-4C57-BBFF-7A833624E45E.svs}
Scope
(1)
Options
(1)
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""