Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
JaneShenGunther`TCGADataTool`
getPotentialPredictors  |
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Details and Options
Examples
(9)
Basic Examples
(1)
Given the example data structure for project TCGA-CESC:
In[1]:=
dataStructure=
[{"TCGAProjectData","TCGACESCExceptGenomicDataAllPatients"},"Data"];
 | exampleDataTCGA |
Get the list of potential predictors for outcome outcome Clinical::Patient::vital_status"
In[2]:=
outcomeProperty="Clinical::Patient::vital_status";
In[3]:=
potentialPredictorsRes=
[dataStructure,outcomeProperty];//EchoTiming
 | getPotentialPredictors |
⌚
19.3029
Inspect the results:
In[4]:=
potentialPredictorsRes//Keys
Out[4]=
{PotentialPredictors,RestrictionBreakdown}
In[5]:=
Length/@potentialPredictorsRes["RestrictionBreakdown"]
Out[5]=
AllSame60,NoData101,Sparse363,Outcome1,Followups112,MaxCategories79,Identifier72,ColumnHeaderPattern0,GenomicData0,Correlated9
In[6]:=
potentialPredictorsRes["PotentialPredictors"]//LengthpotentialPredictorsRes["PotentialPredictors"]〚;;3〛
Out[6]=
138
Out[6]=
{Biospecimen::Aliquot::center_id,Biospecimen::Aliquot::plate_column,Biospecimen::Aliquot::plate_id}
In[7]:=
 | inspectPotentialPredictors |
Out[7]=
Potential predictors by category
Rejected properties from predictors
138 properties were identified as potential predictors | |||||||||||||||||||||||||||||||||||||||||||||||||||||
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Biospecimen Clinical ScrapedData
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Options
(8)
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