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TCGADataTool

Guides

  • TCGA Data Tool

Tech Notes

  • Custom Entities
  • Data Exploration
  • Data Modeling
  • Data Visualization
  • Genomic Data
  • Images Download
  • Property Standard Name
  • User Interface

Symbols

  • buildDesignMatrix
  • buildModel
  • cleanRawData
  • columnHeaderRiskClassSummary
  • downloadGenomicData
  • dynamicallyExploreThreshold
  • exampleDataTCGA
  • getHistologicalImages
  • getPotentialPredictors
  • importGenomicDataFile
  • inspectPotentialPredictors
  • modelMeasurementsAtThreshold
  • overallSurvivalPlot
  • progressionFreeSurvivalPlot
  • pullDataSlice
  • radiologicalImagesBatchProcessing
  • swimmerPlot
  • TCGADataToolUserInterface
JaneShenGunther`TCGADataTool`
progressionFreeSurvivalPlot
​
progressionFreeSurvivalPlot
[dataStructure]
calculates and plots the progression free survival (PFS) probability through time for patients included in the input
dataStructure
.
​
Details and Options

Examples  
(5)
Basic Examples  
(1)
Given the example data structure for project TCGA-CESC:
In[1]:=
dataStructure=
exampleDataTCGA
[{"TCGAProjectData","TCGACESCExceptGenomicDataAllPatients"},"Data"];
Plot the progression free survival rate:
In[2]:=
progressionFreeSurvivalPlot
[dataStructure,ImageSize300]
Out[2]=
Contents cannot be rendered at this time; please try again later
Options  
(2)

Possible Issues  
(1)

Neat Examples  
(1)

SeeAlso
overallSurvivalPlot
 
▪
EventData
 
▪
SurvivalModelFit
TechNotes
▪
Property Standard Name
▪
Data Visualization
RelatedGuides
▪
TCGA Data Tool
""

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