Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
JaneShenGunther`TCGADataTool`
downloadGenomicData |
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Details and Options
Examples
(6)
Basic Examples
(1)
Download data for genomic category "Simple Nucleotide Variation" and subcategory "Masked Somatic Mutation" for project TCGA-CHOL:
In[1]:=
EchoTimingdownloadResults=
["TCGA-CHOL",{"DNA Methylation","Methylation Beta Value"}];
 | downloadGenomicData |
Fri 17 Feb 2023 10:32:18 Starting download of 45 files. Total files size
585.304
MB
Fri 17 Feb 2023 10:32:18 Starting download of /private/var/folders/9s/ssw_w4pj5tsfxv3r6yrjj1mw0000gn/T/TCGADataTool/FileManifest_TCGA-CHOL_DNAMethylation_MethylationBetaValue.txt using GDC command line data transfer tool.
Fri 17 Feb 2023 10:32:18 Evaluating /Users/sschiesaro/Desktop/GitCheckouts/bamc-gdc/Working/Paclet/GDCDataTransferTool/gdc-client_MacOSX download -m /private/var/folders/9s/ssw_w4pj5tsfxv3r6yrjj1mw0000gn/T/TCGADataTool/FileManifest_TCGA-CHOL_DNAMethylation_MethylationBetaValue.txt -d /private/var/folders/9s/ssw_w4pj5tsfxv3r6yrjj1mw0000gn/T/TCGADataTool --latest ; exit 0
Fri 17 Feb 2023 10:32:18 Download started. Downloading data to /private/var/folders/9s/ssw_w4pj5tsfxv3r6yrjj1mw0000gn/T/TCGADataTool...
Fri 17 Feb 2023 11:12:02 Download finished successfully (process exit code 0)
⌚
2385.06
Options
(5)
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""