Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
JaneShenGunther`TCGADataTool`
columnHeaderRiskClassSummary |
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Details and Options
Examples
(1)
Basic Examples
(1)
Load example design matrix for project TCGA-CESC:
In[1]:=
exampleDesignMatrix=
[{"TCGADataModel","TCGACESCClinicalVitalStatusClassifier"},"DesignMatrix"];
 | exampleDataTCGA |
Assign random risk class to each patient in the design matrix:
In[2]:=
patientRiskClasses=RandomChoice[{"LowRisk","ElevatedRisk","HighRisk"},Length[exampleDesignMatrix]];
Breakdown design matrix values for property "Clinical::Patient::vital_status" by patient risk classes:
In[3]:=
| columnHeaderRiskClassSummary |
Out[3]=
Property
,Frequency
,Mean/Mode
,Separation0.006,TypeCategorical
Clinical::Patient::vital_status |
Category: Clinical |
Subcategory: Patient |
Contents cannot be rendered at this time; please try again later |
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Alive |
Alive |
Alive |
Breakdown design matrix values for property "Clinical::Patient::year_of_initial_pathologic_diagnosis" by patient risk classes:
In[4]:=
| columnHeaderRiskClassSummary |
Out[4]=
Property
,Frequency
,Mean/Mode
,Separation0.015,TypeNumeric
Clinical::Patient::year_of_initial_pathologic_diagnosis |
Category: Clinical |
Subcategory: Patient |
Contents cannot be rendered at this time; please try again later |
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2008.2 ± 0.4 |
2008.4 ± 0.5 |
2008.3 ± 0.5 |
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""