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TCGADataTool

Guides

  • TCGA Data Tool

Tech Notes

  • Custom Entities
  • Data Exploration
  • Data Modeling
  • Data Visualization
  • Genomic Data
  • Images Download
  • Property Standard Name
  • User Interface

Symbols

  • buildDesignMatrix
  • buildModel
  • cleanRawData
  • columnHeaderRiskClassSummary
  • downloadGenomicData
  • dynamicallyExploreThreshold
  • exampleDataTCGA
  • getHistologicalImages
  • getPotentialPredictors
  • importGenomicDataFile
  • inspectPotentialPredictors
  • modelMeasurementsAtThreshold
  • overallSurvivalPlot
  • progressionFreeSurvivalPlot
  • pullDataSlice
  • radiologicalImagesBatchProcessing
  • swimmerPlot
  • TCGADataToolUserInterface
JaneShenGunther`TCGADataTool`
buildModel
​
buildModel
[trainingSet,outcome]
builds and trains on
trainingSet
a model as appropriate for the
outcome
type.
​
Details and Options

Examples  
(5)
Basic Examples  
(1)
Get example design matrix for TCGA-CESC project:
In[1]:=
exampleDesignMatrix=
exampleDataTCGA
[{"TCGADataModel","TCGACESCClinicalVitalStatusClassifier"},"DesignMatrix"];
Train a classifier model for the categorial outcome property "Clinical::Patient::vital_status":
In[2]:=
outcomeProperty="Clinical::Patient::vital_status";
In[3]:=
buildModel
[exampleDesignMatrix,outcomeProperty]
Out[3]=
Train a predictor model for the numerical outcome property Clinical::Patient::total_number_of_pregnancies:
In[4]:=
outcomeProperty="Clinical::Patient::total_number_of_pregnancies";
In[5]:=
buildModel
[exampleDesignMatrix,outcomeProperty]
Out[5]=
Options  
(4)

SeeAlso
Classify
 
▪
Predict
 
▪
LinearModelFit
 
▪
LogitModelFit
TechNotes
▪
Property Standard Name
▪
Data Modeling
RelatedGuides
▪
TCGA Data Tool
""

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