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ProteinVisualization

Guides

  • Protein Visualization

Symbols

  • AlphaCarbonPathPlot3D
  • AmidePlanePlot
  • AMPathogenicity
  • BiomoleculePlot3D
  • DihedralAnglePlot
  • ExtractBackboneCoordinates
  • MissenseVariantArrayPlot
  • MissenseVariantData
  • MissenseVariantListPlot
  • MissenseVariantPlot3D
  • MissenseVariantSubstitutionMatrixPlot
  • PathogenicityConfidenceCorrelation
  • PathogenicityConfidencePlot
  • ProteinBackboneAtomPlot
  • ProteinContactGraphPlot
  • ProteinContactMap
  • RamachandranAngles
  • RamachandranPlot
  • ResidueDistanceGraph
  • ResidueDistanceMatrix
  • $CrystalStructuresDirectory
WolframChemistry`ProteinVisualization`
ResidueDistanceMatrix
​
ResidueDistanceMatrix
[biomol]
generates a distance matrix between pairs of residues in a biomolecule (protein or protein-nucleic acid complex).
​
Details and Options

Examples  
(7)
Basic Examples  
(1)
Compute the distance matrix of structure of Avian pancreatic polypeptide: Small globular protein hormone:
In[1]:=
ResidueDistanceMatrix
["1PPT"]//Dimensions
Out[1]=
{36,36}
And visualize the distance matrix:
In[2]:=
MatrixPlot
ResidueDistanceMatrix
["1PPT"]
Out[2]=
Scope  
(5)

Options  
(1)

SeeAlso
ProteinContactMap
 
▪
$CrystalStructuresDirectory
RelatedGuides
▪
Protein Visualization
RelatedLinks
▪
Protein Structure Database
▪
ESMFold
▪
AlphaFold Protein Structure Database
▪
ESMAtlas
""

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