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ProteinVisualization

Guides

  • Protein Visualization

Symbols

  • AlphaCarbonPathPlot3D
  • AmidePlanePlot
  • AMPathogenicity
  • BiomoleculePlot3D
  • DihedralAnglePlot
  • ExtractBackboneCoordinates
  • MissenseVariantArrayPlot
  • MissenseVariantData
  • MissenseVariantListPlot
  • MissenseVariantPlot3D
  • MissenseVariantSubstitutionMatrixPlot
  • PathogenicityConfidenceCorrelation
  • PathogenicityConfidencePlot
  • ProteinBackboneAtomPlot
  • ProteinContactGraphPlot
  • ProteinContactMap
  • RamachandranAngles
  • RamachandranPlot
  • ResidueDistanceGraph
  • ResidueDistanceMatrix
  • $CrystalStructuresDirectory
WolframChemistry`ProteinVisualization`
DihedralAnglePlot
​
DihedralAnglePlot
[biomol]
generates a 3D visualization of protein backbones, highlighting the planes that form dihedral angles ϕ and ψ.
​
Details and Options

Examples  
(16)
Basic Examples  
(1)
Visualize the dihedral angles and relevant planes in rim domain of main porin from Mycobacteria smegmatis:
In[1]:=
DihedralAnglePlot
["2V9U"]
Out[1]=
Scope  
(9)

Options  
(1)

Neat Examples  
(5)

SeeAlso
ProteinBackboneAtomPlot
 
▪
MoleculePlot3D
 
▪
RamachandranPlot
 
▪
$CrystalStructuresDirectory
RelatedGuides
▪
Protein Visualization
RelatedLinks
▪
Dihedral angle in chemistry and protein structures
▪
Paper by G. N. Ramachandran, C. Ramakrishnan, and V. Sasisekharan Stereochemistry of polypeptide chain configurations
▪
Ramachandran Plot
▪
Protein Structure Database
▪
ESMFold
▪
AlphaFold Protein Structure Database
▪
ESMAtlas
""

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