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ProteinVisualization

Guides

  • Protein Visualization

Symbols

  • AlphaCarbonPathPlot3D
  • AmidePlanePlot
  • AMPathogenicity
  • BiomoleculePlot3D
  • DihedralAnglePlot
  • ExtractBackboneCoordinates
  • MissenseVariantArrayPlot
  • MissenseVariantData
  • MissenseVariantListPlot
  • MissenseVariantPlot3D
  • MissenseVariantSubstitutionMatrixPlot
  • PathogenicityConfidenceCorrelation
  • PathogenicityConfidencePlot
  • ProteinBackboneAtomPlot
  • ProteinContactGraphPlot
  • ProteinContactMap
  • RamachandranAngles
  • RamachandranPlot
  • ResidueDistanceGraph
  • ResidueDistanceMatrix
  • $CrystalStructuresDirectory
WolframChemistry`ProteinVisualization`
MissenseVariantArrayPlot
​
MissenseVariantArrayPlot
[
gene
] returns the ArrayPlot of predicted pathogenicity scores per residue corresponding to a specific human protein coding
gene
.
​
Details and Options

Examples  
(5)
Basic Examples  
(1)
Visualize the AlphaMissense (AM) pathogenicity for all possible single amino acid mutations for the Human Translation machinery-associated protein 7B:
In[1]:=
MissenseVariantArrayPlot
["Translation machinery-associated protein 7B"]
Out[1]=
Scope  
(2)

Options  
(2)

SeeAlso
AMPathogenicity
 
▪
MissenseVariantListPlot
 
▪
MissenseVariantSubstitutionMatrixPlot
 
▪
MissenseVariantPlot3D
 
▪
MissenseVariantData
RelatedGuides
▪
Protein Visualization
RelatedLinks
▪
AlphaMissense
▪
Cheng, Jun, et al. Accurate proteome-wide missense variant effect prediction with AlphaMissense. Science 381.6664(2023): eadg7492.
AlphaMissense Database Copyright (2023) DeepMind Technologies Limited . All predictions are provided for non - commercial research use only under CC BY - NC - SA license . Researchers interested in predictions not yet provided, and for non - commercial use, can send an expression of interest to alphamissense@google . com . Disclaimer : The AlphaMissense Database and other information provided on this site is for theoretical modelling only, caution should be exercised in use . It is provided "as - is" without any warranty of any kind, whether express or implied . For clarity, no warranty is given that use of the information shall not infringe the rights of any third party . The information provided is not intended to be a substitute for professional medical advice, diagnosis, or treatment, and does not constitute medical or other professional advice . The predictions in the AlphaMissense Database are predictions only, with varying levels of confidence and should be interpreted carefully . If you use this resource for your research please cite the following publication : "Accurate proteome - wide missense variant effect prediction with AlphaMissense" Jun Cheng, Guido Novati, Joshua Pan, Clare Bycroft, Akvilė Žemgulytė, Taylor Applebaum, Alexander Pritzel, Lai Hong Wong, Michal Zielinski, Tobias Sargeant, Rosalia G . Schneider, Andrew W . Senior, John Jumper, Demis Hassabis, Pushmeet Kohli, Žiga Avsec
""

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