Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
Protein Visualization
Visualize and analyze biomolecular structures like proteins and nucleic acids with 3D graphics, compute key features such as contact maps and dihedral angles, and explore structural biology with our Wolfram paclet.
— generates the α-carbon trace through the backbone atoms of a protein or protein-nucleic acid complex.
— generates the ribbon diagram of a protein or protein-nucleic acid complex.
— generates a plot of the backbone atoms and bonds in a protein or protein-nucleic acid complex.
— generates a visualization of the amide planes along with the backbone atoms in a protein or protein-nucleic acid complex.
— generates a visualization of protein backbones, highlighting the planes that form dihedral angles ϕ and ψ.
— retrieves the coordinates of α-carbon atoms in protein chains and phosphorus atoms in nucleic acid chains.
- generates a distance matrix between pairs of residues in a biomolecule (protein or protein-nucleic acid complex).
—creates a contact map for a protein, nucleic acid, or protein-nucleic acid complex.
- returns an undirected graph of residue contacts of a biomolecule (protein or protein-nucleic acid complex) that is closer than the cutoff distance.
— generates a circular contact graph of protein or protein-nucleic acid complex.
- returns the predicted pathogenicity data corresponding to a specific human protein.
- returns the ListPlot of predicted pathogenicity scores per residue corresponding to a protein.
- returns the ArrayPlot of predicted pathogenicity scores per residue in a protein.
- plots the mean or median predicted pathogenicity due to point mutations in a protein.
- plots the 3D structure of protein with residues color coded by average predicted pathogenicity.
- correlation between confidence of prediction and predicted pathogenicity.
- returns the location where the downloaded coordinate files are stored.
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