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ProteinVisualization

Guides

  • Protein Visualization

Symbols

  • AlphaCarbonPathPlot3D
  • AmidePlanePlot
  • AMPathogenicity
  • BiomoleculePlot3D
  • DihedralAnglePlot
  • ExtractBackboneCoordinates
  • MissenseVariantArrayPlot
  • MissenseVariantData
  • MissenseVariantListPlot
  • MissenseVariantPlot3D
  • MissenseVariantSubstitutionMatrixPlot
  • PathogenicityConfidenceCorrelation
  • PathogenicityConfidencePlot
  • ProteinBackboneAtomPlot
  • ProteinContactGraphPlot
  • ProteinContactMap
  • RamachandranAngles
  • RamachandranPlot
  • ResidueDistanceGraph
  • ResidueDistanceMatrix
  • $CrystalStructuresDirectory
WolframChemistry`ProteinVisualization`
$CrystalStructuresDirectory
​
$CrystalStructuresDirectory
gives the location where the downloaded coordinate files are stored.
​
Details and Options

Examples  
(2)
Basic Examples  
(1)
Get the default location where the downloaded coordinate files will be stored:
In[1]:=
$CrystalStructuresDirectory
Out[1]=
/Users/souticks/Documents/Wolfram/CrystalStructures
Run a function and check if the downloaded coordinate file is stored in $CrystalStructuresDirectory:
In[2]:=
ProteinContactMap
["1A0S"]
Out[2]=
In[3]:=
FileNames"1A0S*",
$CrystalStructuresDirectory

Out[3]=
{/Users/souticks/Documents/Wolfram/CrystalStructures/1A0S.cif.gz}
Scope  
(1)

SeeAlso
ProteinContactMap
 
▪
ProteinBackboneAtomPlot
RelatedGuides
▪
Protein Visualization
""

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