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ProteinVisualization

Guides

  • Protein Visualization

Symbols

  • AlphaCarbonPathPlot3D
  • AmidePlanePlot
  • AMPathogenicity
  • BiomoleculePlot3D
  • DihedralAnglePlot
  • ExtractBackboneCoordinates
  • MissenseVariantArrayPlot
  • MissenseVariantData
  • MissenseVariantListPlot
  • MissenseVariantPlot3D
  • MissenseVariantSubstitutionMatrixPlot
  • PathogenicityConfidenceCorrelation
  • PathogenicityConfidencePlot
  • ProteinBackboneAtomPlot
  • ProteinContactGraphPlot
  • ProteinContactMap
  • RamachandranAngles
  • RamachandranPlot
  • ResidueDistanceGraph
  • ResidueDistanceMatrix
  • $CrystalStructuresDirectory
WolframChemistry`ProteinVisualization`
ResidueDistanceGraph
​
ResidueDistanceGraph
[biomol]
returns an undirected graph of residue contacts of a biomolecule (protein or protein-nucleic acid complex) that is closer than the cutoff distance.
​
Details and Options

Examples  
(15)
Basic Examples  
(1)
Visualize the distance graph of rim domain of main porin from Mycobacteria smegmatis using its PDB ID:
In[1]:=
ResidueDistanceGraph
["2V9U"]
Out[1]=
Scope  
(8)

Options  
(2)

Neat Examples  
(4)

SeeAlso
ResidueDistanceMatrix
 
▪
$CrystalStructuresDirectory
 
▪
ProteinContactGraphPlot
RelatedGuides
▪
Protein Visualization
RelatedLinks
▪
Protein Structure Database
▪
ESMFold
▪
AlphaFold Protein Structure Database
▪
ESMAtlas
""

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