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MoleculeComplex

Guides

  • MoleculeComplex
  • temp

Symbols

  • Packmol
  • FindCoordinationBonds
  • FindHydrogenBonds
  • MakeMolecule3D
  • MoleculeComplexAngle
  • MoleculeComplexAppend
  • MoleculeComplexDelete
  • MoleculeComplexDistance
  • MoleculeComplexEnergy
  • MoleculeComplexJoin
  • MoleculeComplex
  • MoleculeComplexOptimizeGeometry
  • MoleculeComplexPart
  • MoleculeComplexPlot3D
  • MoleculeComplexPosition
  • MoleculeComplexQ
  • MoleculeComplexToMolecule
  • Packmol
  • RandomRotationTransform
  • $MoleculeComplexVersion
RobertNachbar`MoleculeComplex`
MoleculeComplexPlot3D
​
MoleculeComplexPlot3D
[mc]
creates a three-dimensional plot of the model of the molecule complex
mc
.
​
Details and Options
▪
The following options can be given:
"IncludeCoordinationBonds"
None
whether to show coordination bonds
"IncludeHydrogenBonds"
None
whether to show hydrogen bonds
"MoleculeHighlighting"
None
specify molecules and atoms for highlighting
"MoleculeLabels"
None
whether to show molecule labels
"MoleculeLabelStyle"
Automatic
style to use for molecule labels
"MoleculeThemes"
Automatic
plot themes for molecules
▪
"MoleculeThemes"
can be
Automatic
, a
MoleculePlot3D
PlotTheme
string, a list of
PlotTheme
strings, a rule, or a list of rules. The left hand sides of rules should be molecule IDs or patterns that match molecule IDs, and the right hand sides should be
PlotTheme
strings.
​
Examples  
(7)
Basic Examples  
(1)
Define a molecule complex with three molecules:
In[1]:=
trimer=MoleculeComplex
Molecules: 3
Atoms: 12
;
Plot it in 3D:
In[2]:=
MoleculeComplexPlot3D
[trimer]
Out[2]=
Options  
(6)

SeeAlso
MoleculePlot3D
RelatedGuides
▪
MoleculeComplex
""

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