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MoleculeComplex

Guides

  • MoleculeComplex

Symbols

  • Packmol
  • FindCoordinationBonds
  • FindHydrogenBonds
  • MakeMolecule3D
  • MoleculeComplexAngle
  • MoleculeComplexAppend
  • MoleculeComplexDelete
  • MoleculeComplexDistance
  • MoleculeComplexEnergy
  • MoleculeComplexJoin
  • MoleculeComplex
  • MoleculeComplexOptimizeGeometry
  • MoleculeComplexPart
  • MoleculeComplexPlot3D
  • MoleculeComplexPosition
  • MoleculeComplexQ
  • MoleculeComplexToMolecule
  • Packmol
  • RandomRotationTransform
  • $MoleculeComplexVersion
RobertNachbar`MoleculeComplex`
MoleculeComplexJoin
​
MoleculeComplexJoin
[mc,{
mol
1
,
mol
2
,…}]
joins the list of molecules
{
mol
1
,
mol
2
,…}
to the molecule complex
mc
.
​
Examples  
(1)
Basic Examples  
(1)
Define the water dimer:
In[1]:=
waterDimer=MoleculeComplex
Molecules: 2
Atoms: 6
;
In[2]:=
MoleculeComplexPlot3D
[%]
Out[2]=
Join a list of two water molecules to make a tetramer:
In[3]:=
waterTetramer=MoleculeComplexJoinwaterDimer,MoleculeModifyMolecule
water
CHEMICAL
,{"TransformAtomCoordinates",TranslationTransform[{6,0,0}]},MoleculeModifyMolecule
water
CHEMICAL
,{"TransformAtomCoordinates",TranslationTransform[{9,0,0}]}
Out[3]=
MoleculeComplex
Molecules: 4
Atoms: 12

In[4]:=
MoleculeComplexPlot3D
[%]
Out[4]=
Join an association of two water molecules to make a tetramer:
In[5]:=
MoleculeComplexJoinwaterDimer,"three"MoleculeModifyMolecule
water
CHEMICAL
,{"TransformAtomCoordinates",TranslationTransform[{6,0,0}]},"four"MoleculeModifyMolecule
water
CHEMICAL
,{"TransformAtomCoordinates",TranslationTransform[{9,0,0}]}
Out[5]=
MoleculeComplex
Molecules: 4
Atoms: 12

In[6]:=
MoleculeComplexPlot3D
[%,"MoleculeLabels"Automatic]
Out[6]=
SeeAlso
RelatedGuides
▪
MoleculeComplex
""

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