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CompartmentalModeling

Guides

  • Compartmental Modeling

Tech Notes

  • Vertical Transmission Models

Symbols

  • DynamicTransmissionModel
  • ForceOfInfection
  • Incidence
  • NextGenerationMatrix
  • CollectModel
  • CompartmentalModelGraph
  • CompetitiveInhibitorKinetics
  • DefinePropensityFunction
  • DeriveTransitions
  • DynamicTransmissionModel
  • EnzymeReaction
  • EpidemiologyModelData
  • EpidemiologyModel
  • ExpandModel
  • ForceOfInfection
  • HillKinetics
  • Incidence
  • KineticCompartmentalModel
  • KineticReactionNetworkModel
  • MichaelisMentenKinetics
  • NextGenerationMatrix
  • NoncompetitiveInhibitorKinetics
  • NullCompartment
  • ResolveCompartmentalModel
  • StochasticSolve
  • StoichiometryTable
  • StratifyModel
  • Transition
  • UncompetitiveInhibitorKinetics
  • VitalDemographicsModel
  • $C
  • $CompartmentalModelingVersion
  • $EpidemiologyColor
  • $EpidemiologyModelingVersion
  • $R
  • $SystemsBiologyModelingVersion
RobertNachbar`CompartmentalModeling`
ResolveCompartmentalModel
​
ResolveCompartmentalModel
[{
tr
1
,
tr
2
,…},t]
returns a list of the independent components of the transitions
tr
i
and time symbol
t
, where each component is a list of transitions that are considered coupled when they have compartments and/or symbolic rates in common.
​
Details and Options

Examples  
(4)
Basic Examples  
(1)
Give the components of the input transitions:
In[1]:=
ResolveCompartmentalModel
a+b
k1
→
c,c+d
k2
→
e+f,g
k3
→
h,t
Out[1]=
a+b
k1
→
c,c+d
k2
→
e+f,g
k3
→
h
Scope  
(2)

Possible Issues  
(1)

SeeAlso
Transition
 
▪
KineticCompartmentalModel
 
▪
WeaklyConnectedGraphComponents
RelatedGuides
▪
Compartmental Modeling
Created by: rnachbar on 06-15-2021
""

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