Wolfram Function Repository
Instant-use add-on functions for the Wolfram Language
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Remove degenerate matches from differences between biomolecular sequences
ResourceFunction["RemoveDegenerateSequenceDifferences"][diff,type] removes the degenerate letter matches corresponding to the biosequence of type type from the positional differences diff. |
Reduce a set of sequence differences to non-degenerate matches:
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Reducing degenerate differences can split an existing difference:
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Some SARS-CoV-2 sequences have a number of degenerate differences with the reference sequence:
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These differences with degenerate letters are frequently found to be matching, and thus can be simplified:
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