Wolfram Language
Paclet Repository
Community-contributed installable additions to the Wolfram Language
Primary Navigation
Categories
Cloud & Deployment
Core Language & Structure
Data Manipulation & Analysis
Engineering Data & Computation
External Interfaces & Connections
Financial Data & Computation
Geographic Data & Computation
Geometry
Graphs & Networks
Higher Mathematical Computation
Images
Knowledge Representation & Natural Language
Machine Learning
Notebook Documents & Presentation
Scientific and Medical Data & Computation
Social, Cultural & Linguistic Data
Strings & Text
Symbolic & Numeric Computation
System Operation & Setup
Time-Related Computation
User Interface Construction
Visualization & Graphics
Random Paclet
Alphabetical List
Using Paclets
Create a Paclet
Get Started
Download Definition Notebook
Learn More about
Wolfram Language
ProteinVisualization
Guides
Protein Visualization
Symbols
AlphaCarbonPathPlot3D
AmidePlanePlot
BiomoleculePlot3D
DihedralAnglePlot
ExtractBackboneCoordinates
ProteinBackboneAtomPlot
ProteinContactGraphPlot
ProteinContactMap
RamachandranAngles
RamachandranPlot
ResidueDistanceGraph
ResidueDistanceMatrix
$CrystalStructuresDirectory
WolframChemistry`ProteinVisualization`
P
r
o
t
e
i
n
C
o
n
t
a
c
t
M
a
p
P
r
o
t
e
i
n
C
o
n
t
a
c
t
M
a
p
[
b
i
o
m
o
l
]
c
r
e
a
t
e
s
a
c
o
n
t
a
c
t
m
a
p
o
f
r
e
s
i
d
u
e
d
i
s
t
a
n
c
e
s
f
o
r
a
p
r
o
t
e
i
n
,
n
u
c
l
e
i
c
a
c
i
d
,
o
r
p
r
o
t
e
i
n
-
n
u
c
l
e
i
c
a
c
i
d
c
o
m
p
l
e
x
.
D
e
t
a
i
l
s
a
n
d
O
p
t
i
o
n
s
Examples
(
1
7
)
Basic Examples
(
1
)
Visualize the contact map of the crystal structure of the ubiquitin-like domain 1 (Ubl1) of Nsp3 from SARS-CoV-2 using its PDB ID:
I
n
[
1
]
:
=
P
r
o
t
e
i
n
C
o
n
t
a
c
t
M
a
p
[
"
7
K
A
G
"
]
O
u
t
[
1
]
=
S
c
o
p
e
(
5
)
O
p
t
i
o
n
s
(
7
)
N
e
a
t
E
x
a
m
p
l
e
s
(
4
)
S
e
e
A
l
s
o
$
C
r
y
s
t
a
l
S
t
r
u
c
t
u
r
e
s
D
i
r
e
c
t
o
r
y
R
e
l
a
t
e
d
G
u
i
d
e
s
▪
P
r
o
t
e
i
n
V
i
s
u
a
l
i
z
a
t
i
o
n
R
e
l
a
t
e
d
L
i
n
k
s
▪
P
r
o
t
e
i
n
c
o
n
t
a
c
t
m
a
p
▪
P
r
o
t
e
i
n
S
t
r
u
c
t
u
r
e
D
a
t
a
b
a
s
e
▪
E
S
M
F
o
l
d
"
"