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MoleculeFingerprints

Guides

  • Molecule Fingerprints

Tech Notes

  • Substructure Screening

Symbols

  • AtomPairFingerprint
  • ExtendedConnectivityFingerprint
  • LayeredFingerprint
  • MACCSKeysFingerprint
  • MoleculeDistanceMatrix
  • MoleculeDistance
  • MoleculeNearest
  • PatternFingerprint
  • SubstructureKeyFingerprint
  • TopologicalFingerprint
  • $DefaultFingerprintFormat
  • $DefaultFingerprintType
WolframChemistry`MoleculeFingerprints`
MoleculeDistanceMatrix
​
MoleculeDistanceMatrix
[mols]
gives a matrix of the distances between the given molecules.
​
Details and Options

Examples  
(2)
Basic Examples  
(1)
Get the distance matrix for a list of molecules:
In[1]:=
Options
MoleculeDistanceMatrix

In[2]:=
"FingerprintType"
$DefaultFingerprintType
,DistanceFunctionJaccardDissimilarity
In[3]:=
MoleculeDistanceMatrix
[Import[PacletObject["WolframChemistry/MoleculeFingerprints"]["AssetLocation","SMILES strings for 300 antibiotic molecules"]]]//Short
Out[3]//Short=
{{0.,0.970588,301,0.872549,0.8875},303,{1}}
In[4]:=
MatrixPlot[%,PlotLegendsAutomatic]
Out[4]=
Contents cannot be rendered at this time; please try again later
Scope  
(1)

TechNotes
▪
Substructure Screening
RelatedGuides
▪
Molecule Fingerprints
▪
Molecular Structure & Computation
RelatedLinks
Molecular Structure & Computation
""

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