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MoleculeFingerprints

Guides

  • Molecule Fingerprints

Tech Notes

  • Substructure Screening

Symbols

  • AtomPairFingerprint
  • ExtendedConnectivityFingerprint
  • LayeredFingerprint
  • MACCSKeysFingerprint
  • MoleculeDistanceMatrix
  • MoleculeDistance
  • MoleculeNearest
  • PatternFingerprint
  • SubstructureKeyFingerprint
  • TopologicalFingerprint
  • $DefaultFingerprintFormat
  • $DefaultFingerprintType
Molecule Fingerprints
Fingerprints are a method for encoding molecular structure, a kind of feature extractor for molecules. The functions in this paclet allow you to fine-tune the parameters used in this featurization process
Types of fingerprints
ExtendedConnectivityFingerprint
— features based on all atoms within a given "radius"
TopologicalFingerprint
— features based on paths
AtomPairFingerprint
— features based on pairs of atom and the distance between them
MACCSKeysFingerprint
— a predefined set of substructure keys
SubstructureKeyFingerprint
— use a custom set of molecule patterns in a fingerprint
LayeredFingerprint
 ▪
PatternFingerprint
 ▪
$DefaultFingerprintType
Fingerprint comparison
MoleculeDistance
— fingerprint distance between molecules
MoleculeDistanceMatrix
 ▪
MoleculeNearest
RelatedGuides
▪
Molecular Structure & Computation
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