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CompartmentalModeling

Guides

  • Compartmental Modeling

Symbols

  • ForceOfInfection
  • CompartmentalModelGraph
  • CompetitiveInhibitorKinetics
  • DefinePropensityFunction
  • DeriveTransitions
  • DynamicTransmissionModel
  • EnzymeReaction
  • EpidemiologyModelData
  • EpidemiologyModel
  • ForceOfInfection
  • HillKinetics
  • Incidence
  • KineticCompartmentalModel
  • KineticReactionNetworkModel
  • MichaelisMentenKinetics
  • NextGenerationMatrix
  • NoncompetitiveInhibitorKinetics
  • NullCompartment
  • ResolveCompartmentalModel
  • StochasticSolve
  • StoichiometryTable
  • StratifyModel
  • Transition
  • UncompetitiveInhibitorKinetics
  • VitalDemographicsModel
  • $C
  • $CompartmentalModelingVersion
  • $EpidemiologyColor
  • $EpidemiologyModelingVersion
  • $R
  • $SystemsBiologyModelingVersion
RobertNachbar`CompartmentalModeling`
StoichiometryTable
​
StoichiometryTable
[modelData]
gives a formatted table of the stoichiometric information about the transitions in the
modelData
Association
.
​
Examples  
(1)
Basic Examples  
(1)
Load the paclet:
In[1]:=
Needs["RobertNachbar`CompartmentalModeling`"]
Define a model:
In[2]:=
model=​​+ℬ
k
1
⇌
k
2
,​​
k
3
→
2ℬ​​;
Compute the model data:
In[3]:=
modelData=
KineticCompartmentalModel
[model,t];
Display the stoichiometry table:
In[4]:=
StoichiometryTable
[modelData]
Out[4]=
Stoichiometry
Transition

ℬ

Rate

k
3
→
2ℬ
-1
2
0
k
3
[t]
+ℬ
k
1
→

-1
-1
1
k
1
[t]ℬ[t]

k
2
→
+ℬ
1
1
-1
k
2
[t]
RelatedGuides
▪
CompartmentalModeling
""

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