Wolfram Language Paclet Repository
Community-contributed installable additions to the Wolfram Language
TCGA Data Tool retrieves TCGA cancer datasets easily from the NCI GDC and TCIA portals
Contributed by: Jane Shen-Gunther MD, PhD, Rutger S Gunther MD, and Wolfram Solutions
The TCGADataTool provides a user-friendly interface for retrieval of cancer datasets from The Cancer Genome Atlas (TCGA) data portals. The National Cancer Institute (NCI) Genomic Data Commons (GDC) data portal hosts a repository of clinical, biospecimen, genomics, and histological data from 67 primary tumor sites. The Cancer Imaging Archive (TCIA) portal hosts a large archive of radiological images from various clinical cancer projects to include TCGA. Retrieved data may be easily imported into Mathematica for analysis, visualization, machine learning, and other applications.
The current beta version uses the Cervical Cancer Dataset (TCGA-CESC) as a demonstration model.
To install this paclet in your Wolfram Language environment,
evaluate this code:
PacletInstall["JaneShenGunther/TCGADataTool"]
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Wolfram Language Version 13.0