ChristopherWolfram/ ViennaRNALink

(1.0.0) current version: 1.0.5 »

Connecting ViennaRNA to the Wolfram Language for RNA folding

Contributed by: Christopher Wolfram

ViennaRNALink uses the foreign function interface (FFI) to connect Wolfram Language to ViennaRNA, a package used for RNA structure prediction.

Installation Instructions

To install this paclet in your Wolfram Language environment, evaluate this code:
PacletInstall["ChristopherWolfram/ViennaRNALink"]

To load the code after installation, evaluate this code:
Needs["ChristopherWolfram`ViennaRNALink`"]

Details

ViennaRNA is developed by Ivo Hofacker, Peter Stadler, Walter Fontana, Stefan Wuchty, Stephan Bernhart, Ulli Mueckstein, Ronny Lorenz, and the Institute for Theoretical Chemistry of the University of Vienna.

Paclet Guide

Examples

Basic Examples (2)

Fold an RNA sequence:

In[1]:=

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Out[1]=

Plot it:

In[2]:=

Out[2]=

Scope (3)

Get the minimum free energy:

In[3]:=

Out[3]=

Fold random RNA sequences:

In[4]:=

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Out[4]=

Fold a long sequence:

In[5]:=

In[6]:=

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Out[6]=

Publisher

Christopher Wolfram

Disclosures

Local system interactions
Learn More »

Compatibility

Wolfram Language Version 14

Version History

1.0.5 – 01 July 2024
1.0.4 – 29 June 2024
1.0.3 – 29 June 2024
1.0.2 – 28 June 2024
1.0.1 – 28 June 2024
1.0.0 – 28 June 2024

Wolfram Language Paclet Repository