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Related Pages
Related Symbols
Molecule
MoleculeModify
MoleculePattern
MoleculePlot3D
Related Categories
Chemistry
Molecule Substructure Replacement
Example Notebook
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Replace molecular patterns in cyclopentane
Consider the molecule of cyclopentane:
I
n
[
1
]
:
=
m
=
M
o
l
e
c
u
l
e
[
"
c
y
c
l
o
p
e
n
t
a
n
e
"
]
;
M
o
l
e
c
u
l
e
P
l
o
t
3
D
[
m
]
O
u
t
[
1
]
=
Use
M
o
l
e
c
u
l
e
M
o
d
i
f
y
to replace every hydrogen atom with a benzene ring:
I
n
[
2
]
:
=
m
2
=
M
o
l
e
c
u
l
e
M
o
d
i
f
y
[
m
,
{
"
R
e
p
l
a
c
e
S
u
b
s
t
r
u
c
t
u
r
e
"
,
"
H
"
M
o
l
e
c
u
l
e
[
"
b
e
n
z
e
n
e
"
]
}
]
O
u
t
[
2
]
=
M
o
l
e
c
u
l
e
F
o
r
m
u
l
a
:
C
6
5
H
5
0
A
t
o
m
s
:
1
1
5
B
o
n
d
s
:
1
2
5
Show the new molecule:
I
n
[
3
]
:
=
M
o
l
e
c
u
l
e
P
l
o
t
3
D
[
m
2
,
P
l
o
t
T
h
e
m
e
"
T
u
b
e
s
"
]
O
u
t
[
3
]
=
Now replace the central 5-membered ring with a cyclodecane, which is a 10-membered ring. Provide the attachment points as a list of rules from pattern index to replacement index:
I
n
[
4
]
:
=
m
3
=
M
o
l
e
c
u
l
e
M
o
d
i
f
y
[
m
2
,
{
"
R
e
p
l
a
c
e
S
u
b
s
t
r
u
c
t
u
r
e
"
,
M
o
l
e
c
u
l
e
P
a
t
t
e
r
n
[
"
C
1
C
C
C
C
1
"
]
M
o
l
e
c
u
l
e
[
"
c
y
c
l
o
d
e
c
a
n
e
"
]
,
{
1
1
,
2
3
,
3
5
,
4
7
,
5
9
}
}
]
O
u
t
[
4
]
=
M
o
l
e
c
u
l
e
F
o
r
m
u
l
a
:
C
4
H
1
0
O
2
S
2
A
t
o
m
s
:
1
8
B
o
n
d
s
:
1
7
Show the new molecule:
I
n
[
5
]
:
=
M
o
l
e
c
u
l
e
P
l
o
t
3
D
[
m
3
,
P
l
o
t
T
h
e
m
e
"
T
u
b
e
s
"
]
O
u
t
[
5
]
=
See Also
MoleculeRingPattern
Related Symbols
Molecule
MoleculeModify
MoleculePattern
MoleculePlot3D
Publisher Information
Contributed by:
Wolfram Staff
