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RegionBinarize
Image3DSlices
Texture
Polygon

Image Processing
Computer Vision
Life Sciences

Segment a 3D Volume via Region Growing

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Apply segmentation to an electron microscopy dataset of hippocampus tissue

Start with an image of hippocampus tissue with a 10nm resolution:

In[1]:=

tissue=ResourceData["Example""Segment a 3D Volume via Region Growing","Image"];

Extract the top slice and choose a seeding point:

In[2]:=

HighlightImageImage3DSlices[tissue,1],



Out[2]=

Segment the cell body via region growing:

In[3]:=

segment=RegionBinarize[tissue,{{59,62,255}},0.15]

Out[3]=

Display the segmentation in relation to the original dataset:

In[4]:=

ManipulateShowsegment,

tissue

,

options

,{{h,100},0,255},

...



Out[4]=

See Also

Classify Cells Based on Their Shape
Identify Burr Cells
Remove Background Features from a CT Scan

Related Symbols

RegionBinarize
Image3DSlices
Texture
Polygon

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